DPARSFA预处理报错

Submitted by Yin on Sat, 10/03/2015 - 11:48

  dear experts：

参数： 运行环境matlab2013a，spm8update ，试过spm12update, spm8 ,spm12; 也试过matlab2010a,都不能run。

Q1：如果把slice timing 这一步不勾选，则能够运行到normalize to MNI space，why? 

Q2:运行到normalize to MNI space后没有报错，也不继续，怎么没有接着smooth，why？

谢谢~

time points：240        TR:2.2    SLICE number：36     slice order:[1:2:35,2:2:36] (不太确定）   reference frame 不知道没填   voxel size:3.4x3.4x3   其他默认值，报错内容如下。

  

Chris Rorden's dcm2nii :: 1 April 2010 

reading preferences file D:\ProgramFiles\DPARSF_V2.3_130615\dcm2nii\dcm2nii.ini 
reading preferences file DCM2NII.INI 
Validating 240 potential DICOM images. 
Found 240 DICOM images. 
Converting 240/240  240 
461->20150922_094526ep2dpacemoco240v201509101s003a001A.nii 
Saving D:\PROGRAMFILES\ANALYSIS\FUNIMG\SUB02\20150922_094526ep2dpacemoco240v201509101s003a001A.nii 
Time elapsed 1544ms 
Converting Functional Images:sub02 OK
Warning: Directory already exists. 
> In DPARSFA_run>(parfor body) at 225
  In parallel_function at 473
  In DPARSFA_run at 223
  In DPARSFA>pushbuttonRun_Callback at 1601
  In gui_mainfcn at 96
  In DPARSFA at 33
Chris Rorden's dcm2nii :: 1 April 2010 
reading preferences file D:\ProgramFiles\DPARSF_V2.3_130615\dcm2nii\dcm2nii.ini 
reading preferences file DCM2NII.INI 
Validating 176 potential DICOM images. 
Found 176 DICOM images. 
Converting 176/176  1 
202->20150922_094526MPRAGE201509101s004a1001C.nii 
Saving D:\PROGRAMFILES\ANALYSIS\T1IMG\SUB02\20150922_094526MPRAGE201509101s004a1001C.nii 
Reorienting as D:\PROGRAMFILES\ANALYSIS\T1IMG\SUB02\o20150922_094526MPRAGE201509101s004a1001C.nii 
Saving D:\PROGRAMFILES\ANALYSIS\T1IMG\SUB02\o20150922_094526MPRAGE201509101s004a1001C.nii 
Cropping NIfTI/Analyze image D:\PROGRAMFILES\ANALYSIS\T1IMG\SUB02\o20150922_094526MPRAGE201509101s004a1001C.nii 
Saving D:\PROGRAMFILES\ANALYSIS\T1IMG\SUB02\co20150922_094526MPRAGE201509101s004a1001C.nii 
Time elapsed 920ms 
Converting T1 Images:sub02 OK
??? Index exceeds matrix dimensions.
 
Error in ==> DPARSFA_run>(parfor body) at 553
                        delete(DirImg(j).name);
 
Error in ==> parallel_function at 491
            S = F(base, limit);
 
Error in ==> DPARSFA_run at 528
        parfor i=1:AutoDataProcessParameter.SubjectNum
 
Error in ==> DPARSFA>pushbuttonRun_Callback at 1601
    [Error]=DPARSFA_run(handles.Cfg);
 
Error in ==> gui_mainfcn at 96
        feval(varargin{:});
 
Error in ==> DPARSFA at 33
    gui_mainfcn(gui_State, varargin{:});
 
??? Error while evaluating uicontrol Callback

Forums:

YAN Chao-Gan

Sat, 10/03/2015 - 13:16

Hi,

From the error message:

Converting T1 Images:sub02 OK
??? Index exceeds matrix dimensions.

 

Seems there were some problems with the NifTI files. Could you check if there are any .hdr/.img files under FunImg?

Best,

Chao-Gan

Yin

Sun, 10/04/2015 - 12:24

there is one img file under FunImg, it is a multi-volume file. it contains 240 imgs

No executable modules, but still unresolved dependencies or incomplete module inputs.
The following modules did not run:
Skipped: Slice Timing
 
Error using cfg_util (line 835)
Job execution failed. The full log of this run can be found in MATLAB command window, starting with
the lines (look for the line showing the exact #job as displayed in this error message)
------------------
Running job #1
------------------
 
 
Error in spm_jobman (line 217)
 
 
Error in DPARSFA_run>(parfor body) (line 696)
 
 
Error in DPARSFA_run (line 596)
 
 
Error in DPARSFA>pushbuttonRun_Callback (line 1674)
 
 
Error in gui_mainfcn (line 96)
 
 
Error in DPARSFA (line 30)
 
 
Caused by:
    Error using cfg_util (line 835)
    Job execution failed. The full log of this run can be found in MATLAB command window, starting
    with the lines (look for the line showing the exact #job as displayed in this error message)
    ------------------
    Running job #1
    ------------------
 
 
Error while evaluating uicontrol Callback

Yin

Mon, 10/05/2015 - 11:03

I use the basic version, slice timing can do.

but i counter another problem. one subject image is so strange, which don't like to be cut by the machine. frontal gyrus has a black area, what is wrong with this subject? if I reorient image  incorrectly?   

 

YAN Chao-Gan

Mon, 10/12/2015 - 01:19

Hi Yin,

This is pretty common on EPI BOLD images. This is dropout because of air, bone, tissue, etc.

Best,

Chao-Gan