Dear Colleagues,
I wonder if there is a way to run the pipeline with DARTEL using T1s that are already skull-stripped.
I tried doing that with the default options (specifying New Segment + DARTEL) and failed (the output was bad with removed brain parts).
Thank you very much for your time, and I welcome any of your suggestions or comments.
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Regards,
Alex
YAN Chao-Gan
Mon, 08/18/2014 - 16:42
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Hi Alex,
Hi Alex,
I guess "New Segment" need to deal with skull (has skull aprioris). One walkaround can be using the "old" segment, which only incorporates GM, WM and CSF aprioris. And then use "import" and continue DARTEL.
Best,
Chao-Gan
sharky
Mon, 08/18/2014 - 19:55
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Hi Chao-Gan,
Hi Chao-Gan,
Thank you very much for the response! This makes sense.
May I ask though what you mean by "import"?
So, first I run the pipeline with "segment" (old). And what should I do next? - Just uncheck everything including "segment" and check everything including "DARTEL+new segment" (at the same time specifying FunImgAR as a starting folder) - am I right?
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Regards,
Alex
YAN Chao-Gan
Mon, 08/18/2014 - 20:50
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Re: [RFMRI] DPARSFA 2.3: