使用DPARSF时遇见的问题

Submitted by yanzhou on Mon, 10/12/2009 - 05:34
     在做SLICE TIMING时报错

??? Improper assignment with rectangular empty matrix.

 
Error in ==> spm_slice_timing at 228
                            phi(f+1) = -1*shiftamount*2*pi/(len/f);
 
Error in ==> spm_config_slice_timing>slicetiming at 170
    spm_slice_timing(P,Seq,refslice,timing)
 
Error in ==> spm_jobman>run_struct1 at 1379
        feval(prog,val);
 
Error in ==> spm_jobman>run_struct1 at 1387
            run_struct1(c.val{i});
 
Error in ==> spm_jobman>run_struct1 at 1387
            run_struct1(c.val{i});
 
Error in ==> spm_jobman>run_job at 381
    run_struct1(c);
 
Error in ==> spm_jobman at 75
        run_job(varargin{2});
 
Error in ==> DPARSF_run at 212
        spm_jobman('run',jobs);
 
Error in ==> DPARSF>pushbuttonRun_Callback at 841
    [Error]=DPARSF_run(handles.Cfg);
 
Error in ==> gui_mainfcn at 75
        feval(varargin{:});
 
Error in ==> DPARSF at 33
    gui_mainfcn(gui_State, varargin{:});
 
??? Error while evaluating uicontrol Callback.

我扫的是34层的图像，怎么解决呢？请指教，谢谢

      

Forums:

YAN Chao-Gan

Mon, 10/12/2009 - 07:36

Hi!
Please paste the parameters you used for slice timing here. You need to ensure the parameters is correct.
Best wishes!

yanzhou

Mon, 10/12/2009 - 12:18

slice Number 34  ;slice Order 1.3.5.7.9.11 ;Reference Slice 34

YAN Chao-Gan

Tue, 10/13/2009 - 02:37

Hi!
If your slice number is 34, then the slice order can not be 1.3.5.7.9.11.
Please check your parameters, or your can went to the Course (http://www.restfmri.net/forum/Course) to get more information for setting parameters.
Best wishes!

yanzhou

Tue, 10/13/2009 - 06:22

Slice timing 的问题解决了，又出现以下错误，请指教
Running "Normalise: Estimate & Write"
Smoothing by 0 & 8mm..
Coarse Affine Registration..
Fine Affine Registration..
3D CT Norm...
 iteration  1:  FWHM =  21.34 Var = 37.7684
 iteration  2:  FWHM =  15.39 Var = 4.27959
 iteration  3:  FWHM =  14.43 Var = 2.6987
 iteration  4:  FWHM =  14.07 Var = 2.23153
 iteration  5:  FWHM =  13.92 Var = 2.04253
 iteration  6:  FWHM =  13.86 Var = 1.96424
 iteration  7:  FWHM =  13.82 Var = 1.91572
 iteration  8:  FWHM =   13.8 Var = 1.88973
 iteration  9:  FWHM =  13.77 Var = 1.86976
 iteration 10:  FWHM =  13.77 Var = 1.86115
 iteration 11:  FWHM =  13.75 Var = 1.85117
 iteration 12:  FWHM =  13.75 Var = 1.84838
 iteration 13:  FWHM =  13.75 Var = 1.84793
 iteration 14:  FWHM =  13.75 Var = 1.84756
 iteration 15:  FWHM =  13.75 Var = 1.84534
 iteration 16:  FWHM =  13.75 Var = 1.84479
Saving Parameters..
Moving Normalized Files:Sub_001 OK
??? Undefined command/function 'rest_misc'.

Error in ==> DPARSF_rest_sliceviewer at 582
 rest_misc( 'DisplayLastException');

Error in ==> DPARSF_rest_sliceviewer at 27
  varargout{1}=DPARSF_rest_sliceviewer('ShowImage',''); %by Default, I show a black brain image

Error in ==> DPARSF_run at 458
    h=DPARSF_rest_sliceviewer;

Error in ==> DPARSF>pushbuttonRun_Callback at 841
    [Error]=DPARSF_run(handles.Cfg);

Error in ==> gui_mainfcn at 75
        feval(varargin{:});

Error in ==> DPARSF at 33
    gui_mainfcn(gui_State, varargin{:});

??? Error while evaluating uicontrol Callback.
 

YAN Chao-Gan

Tue, 10/13/2009 - 09:47

DPARSF need you install REST V1.3 or later first.
Best wishes.

yanzhou

Wed, 10/14/2009 - 05:09

    我用的版本REST V1.3，今天又试了一次，还是报同样的错。突然发现我用的MatLab是7.1，这有影响吗？

YAN Chao-Gan

Thu, 10/15/2009 - 12:54

Please add the REST's Path to MATLAB's Program path.
Just type "which rest_misc", then you can check if REST is installed correctlly.
Best wishes!

yanzhou

Fri, 10/16/2009 - 00:22

我将REST装在SPM5的toolbox下面，显示如下

>> which rest_misc
E:\SPM5\toolbox\rest\rest_misc.m

YAN Chao-Gan

Fri, 10/16/2009 - 02:45

I think you will not meet the error "??? Undefined command/function 'rest_misc'." now.
But there is another issue, please install the Image Processing Toolbox for MATLAB.