关于dpabi中bet步骤

严老师:


您好!我用dpabi做了一批数据,共有18个subject,其中前9个在bet这一步都可以过去,但后9个在这一步就会报错(后9个subject每一个我都单独做了一下这一步),matlab报错信息如下:


Bet begin...


Chris Rorden's dcm2nii :: 1 April 2010


reading preferences file D:\Program_Filess\DPABI_V1.1_140827\DPARSF_V3.0_140815\dcm2nii\dcm2nii.ini


Adjusting NIfTI/Analyze image D:\pain_l\RealignParameter\sub_047\Bet_meanaWANG_LANZHI_20130925_433203476_1301_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr


Changing subformat of D:\pain_l\RealignParameter\sub_047\Bet_meanaWANG_LANZHI_20130925_433203476_1301_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr


Image data-type is SHORTS


Image min/max is -37 1648


bas = -37, range = 1685


Image voxel size: 1.796875 1.796875 2.999954


Image dimensions: 128 128 50


hist_min=0.000000 thresh2=4.000000 thresh=15.000000 thresh98=114.000000 hist_max=248.000000


CofG (114.124335,128.267836,69.714360) mm


RADIUS 69.518621


MEDIANVAL 82.000000


Pass 1, iteration 0


Pass 1, iteration 50


Pass 1, iteration 100


Pass 1, iteration 150


Pass 1, iteration 200


Pass 1, iteration 250


Pass 1, iteration 300


Pass 1, iteration 350


Pass 1, iteration 400


Pass 1, iteration 450


Pass 1, iteration 500


Pass 1, iteration 550


Pass 1, iteration 600


Pass 1, iteration 650


Pass 1, iteration 700


Pass 1, iteration 750


Pass 1, iteration 800


Pass 1, iteration 850


Pass 1, iteration 900


Pass 1, iteration 950


self-intersection total = 48.342182 (threshold=4000.000000)


1.474293 secs


 


0.032178 for pre-processing


0.245222 for normal computation


0.958141 for search along normal


0.094163 for checking self-intersection


0.036788 for output


Chris Rorden's dcm2nii :: 1 April 2010


reading preferences file D:\Program_Filess\DPABI_V1.1_140827\DPARSF_V3.0_140815\dcm2nii\dcm2nii.ini


Adjusting NIfTI/Analyze image D:\pain_l\RealignParameter\sub_045\Bet_meanaMA_ZHENGQIONG_20130902_431220457_601_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr


Changing subformat of D:\pain_l\RealignParameter\sub_045\Bet_meanaMA_ZHENGQIONG_20130902_431220457_601_FE_EPI_SENSE_FE_EPI_011BeforeBet.hdr


Image data-type is SHORTS


Image min/max is -13 1804


bas = -13, range = 1817


Image voxel size: 1.796875 1.796875 2.999886


Image dimensions: 128 128 50


hist_min=0.000000 thresh2=0.000000 thresh=10.000000 thresh98=100.000000 hist_max=247.000000


CofG (114.118970,122.825888,71.238115) mm


RADIUS 70.173773


MEDIANVAL 68.000000


Pass 1, iteration 0


Pass 1, iteration 50


Pass 1, iteration 100


Pass 1, iteration 150


Pass 1, iteration 200


Pass 1, iteration 250


Pass 1, iteration 300


Pass 1, iteration 350


Pass 1, iteration 400


Pass 1, iteration 450


Pass 1, iteration 500


Pass 1, iteration 550


Pass 1, iteration 600


Pass 1, iteration 650


Pass 1, iteration 700


Pass 1, iteration 750


Pass 1, iteration 800


Pass 1, iteration 850


Pass 1, iteration 900


Pass 1, iteration 950


self-intersection total = 72.222524 (threshold=4000.000000)


1.436402 secs


 


0.033253 for pre-processing


0.240249 for normal computation


0.946821 for search along normal


0.093965 for checking self-intersection


0.016359 for output


Chris Rorden's dcm2nii :: 1 April 2010


reading preferences file D:\Program_Filess\DPABI_V1.1_140827\DPARSF_V3.0_140815\dcm2nii\dcm2nii.ini


Adjusting NIfTI/Analyze image D:\pain_l\T1ImgBet\sub_047\Bet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refBeforeBet.hdr


Changing subformat of D:\pain_l\T1ImgBet\sub_047\Bet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refBeforeBet.hdr


Not enough data in D:\pain_l\T1ImgBet\sub_047\fBet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refBeforeBet.img


Actually read 0


??? Error using ==> y_Read at 54


File doesn't exist: D:\pain_l\T1ImgBet\sub_047\Bet_coWANG_LANZHI_20130925_433203476_1401_T1W_3D_TFE_ref_CLEAR_T1W_3D_TFE_refAfterBet.img


 


Error in ==> y_Call_bet at 46


    Data = y_Read(fullfile(OutPath,[OutFile,'AfterBet.img']));


 


Error in ==> DPARSFA_run>(parfor body) at 1399


        y_Call_bet(T1File, OutputFile_Temp, '');


 


Error in ==> parallel_function at 469


            F(base, limit);


 


Error in ==> DPARSFA_run at 1371


    parfor i=1:AutoDataProcessParameter.SubjectNum


 


Error in ==> DPARSFA>pushbuttonRun_Callback at 1663


    [Error]=DPARSFA_run(handles.Cfg);


 


Error in ==> gui_mainfcn at 96


        feval(varargin{:});


 


Error in ==> DPARSFA at 30


    gui_mainfcn(gui_State, varargin{:});


 


??? Error while evaluating uicontrol Callback


请问怎么解决?


谢谢!

Hi,

I think bet (compiled by Dr. Chris Rorden) can not process those subjects.

Probably you can use Linux or Mac OS and the latest FSL to have a try.

Best,

Chao-Gan

严老师:


您好!但是我所有的数据采集和bet前的预处理都完全一样,为什么会有的可以做,有的不可以做?另外,如果不做bet这一步,所有的数据都可以往下做的,如果我不做这一步,对结果的影响大吗?


谢谢您及时的回复!

Bet will help for coregistration. But if the coregistration is good enough, you can skip it!

Please speak up if you would like me to switch to Chinese.

Best,

Chao-Gan

我就是发现用老版本的DPARSF做出的结果不是很好,所以想用DPARSF3.0做一下看看结果。我先用其它方法做bet这一步,然后将T1Img的前缀改为Bet,然后再做coregistration,这样行吗?


谢谢!

Yes.

And you can even UNCHECK "bet".

Best,

Chao-Gan

谢谢您及时的回复!